Tag Archives: HMMER

Alignment and phylogenetic inference with hmmalign and RAxML-ng

Posted on May 31, 2022 by Jeff

RAxML is one of the most popular programs around for phylogenetic inference via maximum likelihood. Similarly, hmmalign within HMMER 3 is a popular way to align amino acid sequences against HMMs from Pfam or created de novo. Combine the two … Continue reading →

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